PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 449aa    MW: 50251.8 Da    PI: 6.914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07362402954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++++P        K++ a++L +A +Y+k L
  XP_012574060.1 362 ARHRRERISEKIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 402
                     599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.17353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-11358411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.39E-9359407No hitNo description
SuperFamilySSF474593.53E-13359412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4363402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MIGNIYKDQS FISSQKLQSS MEGLNWNGSE ILESTPILWS THHQEQNMEG DYSSISKSHI  60
HQIQEMDQKV QTSHTVMMPN TNFSQHAAAA ALTTMTVKSG EAAVSSWKKE PLILQSFQSS  120
SVNKPYNSST ITTTSTNYMP DFNMAHQQQK QLIKSGCSFD CLISASTNSN TDTTSIEDDD  180
GISNIFSDCR RRNLWNFSYA TTASNSSAET DHSNVSNGTN YKNKDMQCNK LNELDETMSQ  240
TSSDQLQSKA SDHHFFSTVQ NSVSVENGFG IFSDKPPKCK KPRWEKGPFS SNINFQQPKS  300
STTCCSSSSN EETDPEAVAA MKEMMYRAAA FRPVNFGMEN DVIEKPKRKN VKISNDPQTV  360
AARHRRERIS EKIRVLQKIV PGGSKMDTAS MLDEAANYLK FLRSQVKALE SLGNKVNAMD  420
CPSTSIAFSF NPSFHMQIHP SDHNNHDYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574060.10.0PREDICTED: transcription factor bHLH87-like isoform X2
SwissprotQ8S3D21e-72BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A072TLG81e-161A0A072TLG8_MEDTR; Transcription factor
STRINGGLYMA07G01611.11e-139(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-62bHLH family protein